ui
Class Systemic

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Window
              java.awt.Frame
                  javax.swing.JFrame
                      ui.Systemic

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.beans.PropertyChangeListener, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants, FoldPlotListener, ResidualsWindowListener, ProgressListener, NewSpectrumListener

public class Systemic
extends javax.swing.JFrame
implements java.beans.PropertyChangeListener, java.awt.event.ActionListener, FoldPlotListener, ResidualsWindowListener, NewSpectrumListener, ProgressListener

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

javax.swing.JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

java.awt.Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

java.lang.String	currentFileName
FTestWindowSig	ftestWinSig
boolean	IgnoreReset
IntegratorLoader	intLoader
static Systemic	mainApp

Fields inherited from class javax.swing.JFrame

accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Systemic()

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e)
void	activateTab(int tab)
void	addConsoleNotificationListener(ConsoleNotificationListener listener)
int	addPlanet(double[] ic)
void	attachDetachOrbital()
void	attachDetachPalette()
void	attachDetachResiduals(ResidualsWindow rw, boolean dock)
java.lang.Thread	autoFit(boolean silent)
void	changeDataIndex(java.lang.String dataName, java.lang.Boolean isUser)
void	changeDataSets()
void	changeDataSets(boolean keepDataSets)
void	changeDataSets(java.lang.String givenPrimary)
void	changeDataSets(java.lang.String givenPrimary, boolean keepDataSets)
void	clearPlot()
void	clearPlotCurves()
void	defaultFocus()
void	doRedo()
void	doUndo()
void	exec(java.lang.String command)
void	execQuickEntry(java.lang.String cmd)
java.lang.Thread	execScript(java.lang.String fileNm2)
java.lang.Thread	execScript(java.lang.String fileNm2, boolean hideWindow)
java.lang.Thread	execScript(java.lang.String fileNm2, ScriptOutput output)
void	findPrimaryTele(java.lang.String givenPrimary)
void	foldUpdated()
boolean	getAutoUpdateFTest()
boolean	getAutoUpdatePeriods()
javax.swing.JPanel	getBottomToolbar()
double	getChiSqr()
java.lang.String	getCurrentFitName()
java.lang.String	getCurrentSys()
java.lang.String	getCurrentSysNickNm()
Pair<java.lang.String,java.lang.Boolean>	getDataIndex()
java.lang.String	getDataIndexName()
GenericList	getDataSetsCopy()
GenericList	getDataSetsNamesCopy()
java.lang.String[]	getDefaultSystems()
DynamicsPanel	getDynamics()
double	getEndTime()
FitSnapshot	getFitSnapshot()
boolean	getFitTransits()
double[]	getFTest()
boolean[][]	getIcFit()
int[][]	getIcFitI()
GenericList	getInitConditions()
double[][]	getInitConditions2D()
int	getIntMethod()
java.lang.String	getIntMethodName()
double	getJitter()
Kernel	getKernel()
static Systemic	getMainApp()
double	getMstar()
int	getNofPlanets()
int	getNofVoffs()
void	getObserveData()
double[][]	getObserveDataCopy()
transitsBag	getObservedTransits()
LogPlot2	getPeriodogram()
LogPlot2	getPeriodRes()
java.lang.String[]	getPlanetNames()
java.lang.String[]	getPlanetNotes()
FoldPlot	getPlotter()
java.lang.String	getPrimaryTele()
double[][]	getResiduals()
double[][]	getResiduals(double[][] data)
FoldPlot	getResidualsPlotter()
double	getRMS()
double	getStartTime()
SystemData	getSystemData()
FitSnapshot	getTab()
FitSnapshot	getTab(int tab)
int	getTabIdx()
double	getTimeExtend()
double[]	getTRange()
double[][]	getTransits()
double	getVextent()
double[]	getVoffsets()
boolean[]	getVoffsFit()
int[]	getVoffsFitI()
VoffsetPanel	getVOffsPanel()
void	init()
boolean	isCoplanar()
boolean	isTabActive(int tab)
void	loadFile(java.lang.String fileName)
void	loadFiles(java.lang.String[] fileNames)
void	lockConsole(boolean lock)
void	newSpectrumListenerUpdate()
void	openBackend()
boolean	openFit(java.lang.String fileNm)
protected boolean	openFit(java.lang.String tab, java.lang.String fileNm)
protected boolean	openFitInCurrentTab(java.lang.String fileNm)
void	openSystem(java.lang.String fileName)
void	openSystem(java.lang.String fileName, Pair<java.lang.String,java.lang.Boolean> dataIndex)
void	openSystem(java.lang.String fileName, java.lang.String dataName, boolean isUser)
void	openSystemFromFile(java.lang.String cSys)
void	openSystemFromFile(java.lang.String cSys, Pair<java.lang.String,java.lang.Boolean> dataIndex)
void	periodogram()
void	periodogramWindowFunction()
void	periodres()
void	phaseUpdated()
void	polishAndWait()
void	polishAndWait(int method)
protected void	processWindowEvent(java.awt.event.WindowEvent e)
void	propertyChange(java.beans.PropertyChangeEvent e)
void	quit()
void	redraw()
void	registerRedo()
void	registerUndo()
void	resetSystem()
void	resetTab(int tab)
void	residualsUpdated()
void	saveFit(java.lang.String fileNm)
void	setAutoUpdateFTest(boolean v)
void	setAutoUpdatePeriods(boolean v)
void	setBusy(boolean busy, java.lang.String why)
void	setComputationDone()
void	setCrvSamplePoints(int crvPoints)
void	setFitSnapshot(FitSnapshot f)
void	setFitTransits(boolean fitTransits)
void	setIntMethod(int iM)
void	setKernel(Kernel k)
void	setKernelTo(Kernel k)
void	setMax(int value)
void	setObservedAstrometric(astrometricBag bag)
void	setObservedTransits(transitsBag bag)
void	setPredictedTransits(transitsBag bag)
void	setProgress(int value, java.lang.String msg)
void	setResults(java.lang.Object results)
void	setShift(double shift)
static void	startConsole()
static void	storeCurve(double[][] curve, java.lang.String name, java.lang.String title)
protected void	updateMemoryUsage()
protected void	updateThreadNumber(int n)

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOwnedWindows, getOwner, getOwnerlessWindows, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, setBackground, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

intLoader

public IntegratorLoader intLoader

IgnoreReset

public boolean IgnoreReset

ftestWinSig

public FTestWindowSig ftestWinSig

currentFileName

public java.lang.String currentFileName

mainApp

public static Systemic mainApp

Constructor Detail

Systemic

public Systemic()

Method Detail

loadFile

public void loadFile(java.lang.String fileName)

loadFiles

public void loadFiles(java.lang.String[] fileNames)

getChiSqr

public double getChiSqr()

Returns:

getRMS

public double getRMS()

Returns:

getJitter

public double getJitter()

Returns:

init

public void init()

processWindowEvent

protected void processWindowEvent(java.awt.event.WindowEvent e)

Overrides:

processWindowEvent in class javax.swing.JFrame

findPrimaryTele

public void findPrimaryTele(java.lang.String givenPrimary)

openSystem

public void openSystem(java.lang.String fileName)
                throws java.lang.Exception

Parameters:

fileName -

Throws:

java.lang.Exception

getVextent

public double getVextent()

openSystem

public void openSystem(java.lang.String fileName,
                       java.lang.String dataName,
                       boolean isUser)

openSystem

public void openSystem(java.lang.String fileName,
                       Pair<java.lang.String,java.lang.Boolean> dataIndex)
                throws java.lang.Exception

Throws:

java.lang.Exception

getBottomToolbar

public javax.swing.JPanel getBottomToolbar()

openSystemFromFile

public void openSystemFromFile(java.lang.String cSys)

openSystemFromFile

public void openSystemFromFile(java.lang.String cSys,
                               Pair<java.lang.String,java.lang.Boolean> dataIndex)

getPlotter

public FoldPlot getPlotter()

getResidualsPlotter

public FoldPlot getResidualsPlotter()

isCoplanar

public boolean isCoplanar()

propertyChange

public void propertyChange(java.beans.PropertyChangeEvent e)

Specified by:

propertyChange in interface java.beans.PropertyChangeListener

setCrvSamplePoints

public void setCrvSamplePoints(int crvPoints)

Parameters:

crvPoints -

attachDetachResiduals

public void attachDetachResiduals(ResidualsWindow rw,
                                  boolean dock)

Specified by:

attachDetachResiduals in interface ResidualsWindowListener

attachDetachPalette

public void attachDetachPalette()

attachDetachOrbital

public void attachDetachOrbital()

exec

public void exec(java.lang.String command)

Parameters:

command -

polishAndWait

public void polishAndWait()

polishAndWait

public void polishAndWait(int method)

isTabActive

public boolean isTabActive(int tab)

Parameters:

fileNm -

Returns:

getTab

public FitSnapshot getTab(int tab)

getTab

public FitSnapshot getTab()

getTabIdx

public int getTabIdx()

activateTab

public void activateTab(int tab)

resetTab

public void resetTab(int tab)

openFit

public boolean openFit(java.lang.String fileNm)

openFitInCurrentTab

protected boolean openFitInCurrentTab(java.lang.String fileNm)

openFit

protected boolean openFit(java.lang.String tab,
                          java.lang.String fileNm)
                   throws java.lang.Exception

Throws:

java.lang.Exception

changeDataIndex

public void changeDataIndex(java.lang.String dataName,
                            java.lang.Boolean isUser)

autoFit

public java.lang.Thread autoFit(boolean silent)

execScript

public java.lang.Thread execScript(java.lang.String fileNm2)

execScript

public java.lang.Thread execScript(java.lang.String fileNm2,
                                   boolean hideWindow)

execScript

public java.lang.Thread execScript(java.lang.String fileNm2,
                                   ScriptOutput output)

getPlanetNames

public java.lang.String[] getPlanetNames()

getPlanetNotes

public java.lang.String[] getPlanetNotes()

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Specified by:

actionPerformed in interface java.awt.event.ActionListener

setShift

public void setShift(double shift)

getFitTransits

public boolean getFitTransits()

Returns:

setFitTransits

public void setFitTransits(boolean fitTransits)

Parameters:

fitTransits -

execQuickEntry

public void execQuickEntry(java.lang.String cmd)

quit

public void quit()

updateThreadNumber

protected void updateThreadNumber(int n)

updateMemoryUsage

protected void updateMemoryUsage()

getFTest

public double[] getFTest()

openBackend

public void openBackend()

getFitSnapshot

public FitSnapshot getFitSnapshot()

setFitSnapshot

public void setFitSnapshot(FitSnapshot f)

getAutoUpdatePeriods

public boolean getAutoUpdatePeriods()

Returns:

setAutoUpdatePeriods

public void setAutoUpdatePeriods(boolean v)

Parameters:

v -

getAutoUpdateFTest

public boolean getAutoUpdateFTest()

Returns:

setAutoUpdateFTest

public void setAutoUpdateFTest(boolean v)

Parameters:

v -

periodres

public void periodres()

getPeriodRes

public LogPlot2 getPeriodRes()

periodogram

public void periodogram()

getPeriodogram

public LogPlot2 getPeriodogram()

newSpectrumListenerUpdate

public void newSpectrumListenerUpdate()

Specified by:

newSpectrumListenerUpdate in interface NewSpectrumListener

periodogramWindowFunction

public void periodogramWindowFunction()

registerUndo

public void registerUndo()

registerRedo

public void registerRedo()

doUndo

public void doUndo()

doRedo

public void doRedo()

clearPlot

public void clearPlot()

clearPlotCurves

public void clearPlotCurves()

changeDataSets

public void changeDataSets()

changeDataSets

public void changeDataSets(boolean keepDataSets)

changeDataSets

public void changeDataSets(java.lang.String givenPrimary)

changeDataSets

public void changeDataSets(java.lang.String givenPrimary,
                           boolean keepDataSets)

lockConsole

public void lockConsole(boolean lock)

setBusy

public void setBusy(boolean busy,
                    java.lang.String why)

getStartTime

public double getStartTime()

Returns:

getEndTime

public double getEndTime()

Returns:

getNofPlanets

public int getNofPlanets()

getNofVoffs

public int getNofVoffs()

getIntMethod

public int getIntMethod()

Returns:

getIntMethodName

public java.lang.String getIntMethodName()

Returns:

getDataSetsCopy

public GenericList getDataSetsCopy()

Returns:

getDataSetsNamesCopy

public GenericList getDataSetsNamesCopy()

Returns:

getIcFit

public boolean[][] getIcFit()

Returns:

getIcFitI

public int[][] getIcFitI()

getVoffsFit

public boolean[] getVoffsFit()

Returns:

getVoffsFitI

public int[] getVoffsFitI()

Returns:

getCurrentSys

public java.lang.String getCurrentSys()

Returns:

getCurrentSysNickNm

public java.lang.String getCurrentSysNickNm()

Returns:

getVoffsets

public double[] getVoffsets()

Returns:

getCurrentFitName

public java.lang.String getCurrentFitName()

getPrimaryTele

public java.lang.String getPrimaryTele()

Returns:

setIntMethod

public void setIntMethod(int iM)

Parameters:

iM -

getResiduals

public double[][] getResiduals()

Returns:

getMstar

public double getMstar()

Returns:

getDefaultSystems

public java.lang.String[] getDefaultSystems()

getResiduals

public double[][] getResiduals(double[][] data)

Parameters:

data -

Returns:

resetSystem

public void resetSystem()

getInitConditions

public GenericList getInitConditions()

Returns:

getInitConditions2D

public double[][] getInitConditions2D()

Returns:

defaultFocus

public void defaultFocus()

addPlanet

public int addPlanet(double[] ic)

getDynamics

public DynamicsPanel getDynamics()

getVOffsPanel

public VoffsetPanel getVOffsPanel()

redraw

public void redraw()

getTransits

public double[][] getTransits()

setPredictedTransits

public void setPredictedTransits(transitsBag bag)

Parameters:

bag -

setObservedAstrometric

public void setObservedAstrometric(astrometricBag bag)

Parameters:

bag -

getSystemData

public SystemData getSystemData()

setObservedTransits

public void setObservedTransits(transitsBag bag)

Parameters:

bag -

getObservedTransits

public transitsBag getObservedTransits()

Returns:

getObserveData

public void getObserveData()

getTimeExtend

public double getTimeExtend()

Returns:

getObserveDataCopy

public double[][] getObserveDataCopy()

Returns:

getDataIndex

public Pair<java.lang.String,java.lang.Boolean> getDataIndex()

Returns:

getDataIndexName

public java.lang.String getDataIndexName()

Returns:

getTRange

public double[] getTRange()

saveFit

public void saveFit(java.lang.String fileNm)

Parameters:

fileNm -

storeCurve

public static void storeCurve(double[][] curve,
                              java.lang.String name,
                              java.lang.String title)

getKernel

public Kernel getKernel()

setKernel

public void setKernel(Kernel k)

setKernelTo

public void setKernelTo(Kernel k)

startConsole

public static void startConsole()

foldUpdated

public void foldUpdated()

Specified by:

foldUpdated in interface FoldPlotListener

phaseUpdated

public void phaseUpdated()

Specified by:

phaseUpdated in interface FoldPlotListener

residualsUpdated

public void residualsUpdated()

Specified by:

residualsUpdated in interface ResidualsWindowListener

addConsoleNotificationListener

public void addConsoleNotificationListener(ConsoleNotificationListener listener)

getMainApp

public static Systemic getMainApp()

setMax

public void setMax(int value)

Specified by:

setMax in interface ProgressListener

setProgress

public void setProgress(int value,
                        java.lang.String msg)

Specified by:

setProgress in interface ProgressListener

setResults

public void setResults(java.lang.Object results)

Specified by:

setResults in interface ProgressListener

setComputationDone

public void setComputationDone()

Specified by:

setComputationDone in interface ProgressListener